For my "cygrun.exe" wrapper to work it should be behind shebang scripts in the PATH, so moved ~/usr/bin to the PATH end on Cygwin.
# -*- mode: conf -*-
# https://mintty.github.io/mintty.1.html
ForegroundColour=black
BackgroundColour=white
CursorColour=brown
Black=black
# 696969
BoldBlack=DimGrey
# ff4500
Red=OrangeRed
# ff1493
BoldRed=DeepPink
# 228b22
Green=ForestGreen
# 3cb371
BoldGreen=MediumSeaGreen
# ffa500
Yellow=orange
# ffd700
BoldYellow=gold
# 000080
Blue=navy
# 0000ff
BoldBlue=blue
# b03060
Magenta=maroon
# ff00ff
BoldMagenta=magenta
# 008b8b
Cyan=DarkCyan
BoldCyan=DarkTurquoise
White=white
# Fixed Gradle output:
# https://github.com/gradle/gradle/issues/15266
BoldWhite=DarkGray
# Block, Underscore, Line.
CursorType=Block
CursorBlinks=yes
# Off, Low, Medium, High, Glass (>= Vista only).
Transparency=Low
OpaqueWhenFocused=yes
# 'Lucida Console' and 'Courier New' are the best fixed width font under Windows.
# Nice looks and support large amount of chars.
Font=Courier New
BoldAsFont=yes
BoldAsColour=no
# 10 on low DPI, 12 on hi DPI
FontHeight=@CFG_FONT_SIZE@
AllowBlinking=no
FontSmoothing=None
BackspaceSendsBS=no
# Enable Ctrl+Ins and Shift+Ins.
ClipShortcuts=yes
# Disable Windows Alt+Space and Alt+Enter shortcuts.
WindowShortcuts=no
# I'm using Ctrl+LCLick or Menu key binding for switching.
# TabBar=yes
# Disable Ctrl+TAB and Ctrl+Shift+TAB shortcuts for use in screen(1). "Menu" key allows select windows visually.
SwitchShortcuts=no
# Enable font zooming shortcuts Ctrl+plus/minus/zero.
ZoomShortcuts=yes
# Shift, Ctrl, Alt, Off.
ScrollMod=Shift
CopyAsRTF=yes
# Use mouse copy on select like in X window.
CopyOnSelect=yes
ClicksPlaceCursor=no
RightClickAction=menu
# 0: No Beep, 1: Default Beep, etc
BellType=0
BellFlash=yes
BellFlashStyle=4
Term=mintty
Answerback=
# -w max
Window=max
Columns=160
Rows=40
Scrollbar=right
ScrollbackLines=10000
ConfirmExit=yes